Hi,
To add to the index.php issues that have come up, I've got a strange but slightly less dramatic problem when installing analytics. I'm using a horizontal theme that i've worked on extensively, based on the Columner theme.
1. I edited my index.php file in dreamweaver, adding the analytics code in the correct place.
2. Uploaded to my site directory with cyberduck in the correct folder
3. Saw that for some reason my menu had been squashed to the top left corner, making the pre-nav and post-nav text appear on top of the menu headings, and my collapsing menus are now stuck "open"
4. took out the analytics code and re-uploaded the original index.php file to the directory. Things are still the same.
I know I did something wrong, but have no idea why this would effect thing in this way.
Any help would be appreciated. My site is www.angusmccullough.com